HL_2UUA_035

3D structure

PDB id

2UUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

2UUA|1|A|U|839, 2UUA|1|A|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UUA_035 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3025

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

2UUA|1|A|G|837
2UUA|1|A|G|838
2UUA|1|A|U|839
2UUA|1|A|C|840
2UUA|1|A|U|841
2UUA|1|A|C|848
2UUA|1|A|C|849

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain R

30S RIBOSOMAL PROTEIN S18