HL_2UUC_012

3D structure

PDB id

2UUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

2UUC|1|A|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UUC_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.0754

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

2UUC|1|A|C|458
2UUC|1|A|G|460
2UUC|1|A|A|461
2UUC|1|A|C|470
2UUC|1|A|G|471
2UUC|1|A|A|472
2UUC|1|A|G|473

Current chains

Chain A

16S RRNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16