3D structure

PDB id
2UUC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CCU(CM0)AC(6MZ)AG
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: CM0, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

2UUC|1|Y|C|31
2UUC|1|Y|C|32
2UUC|1|Y|U|33
2UUC|1|Y|CM0|34
2UUC|1|Y|A|35
2UUC|1|Y|C|36
2UUC|1|Y|6MZ|37
2UUC|1|Y|A|38
2UUC|1|Y|G|39

Current chains

Chain Y
5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3'

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain L
30S RIBOSOMAL PROTEIN S12
Chain M
30S RIBOSOMAL PROTEIN S13
Chain X
5'-R(*GP*UP*AP*AP*AP*AP)-3'

Coloring options:

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