HL_2UUC_033

3D structure

PDB id

2UUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCU(CM0)AC(6MZ)AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: CM0, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2UUC|1|Y|C|31
2UUC|1|Y|C|32
2UUC|1|Y|U|33
2UUC|1|Y|CM0|34
2UUC|1|Y|A|35
2UUC|1|Y|C|36
2UUC|1|Y|6MZ|37
2UUC|1|Y|A|38
2UUC|1|Y|G|39

Current chains

Chain Y

5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3'

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L

30S RIBOSOMAL PROTEIN S12

Chain M

30S RIBOSOMAL PROTEIN S13

Chain X

5'-R(*GP*UP*AP*AP*AP*AP)-3'