HL_2UXB_026

3D structure

PDB id

2UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

2UXB|1|A|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UXB_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2559

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

2UXB|1|A|G|1134
2UXB|1|A|U|1135
2UXB|1|A|U|1136
2UXB|1|A|C|1137
2UXB|1|A|G|1138
2UXB|1|A|G|1139
2UXB|1|A|C|1140

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN S9