HL_2UXC_012

3D structure

PDB id

2UXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

2UXC|1|A|C|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UXC_012 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.109

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

2UXC|1|A|C|458
2UXC|1|A|G|459
2UXC|1|A|A|460
2UXC|1|A|C|461
2UXC|1|A|G|462
2UXC|1|A|A|463
2UXC|1|A|G|474

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN S16