HL_2UXC_034

3D structure

PDB id

2UXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

2UXC|1|A|U|839, 2UXC|1|A|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UXC_034 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.272

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

2UXC|1|A|G|837
2UXC|1|A|G|838
2UXC|1|A|U|839
2UXC|1|A|C|840
2UXC|1|A|U|841
2UXC|1|A|C|848
2UXC|1|A|C|849

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN S2

Chain R

RIBOSOMAL PROTEIN S18