HL_2UXD_005

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

2UXD|1|A|U|202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UXD_005 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.1291

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

2UXD|1|A|C|201
2UXD|1|A|U|202
2UXD|1|A|U|203
2UXD|1|A|U|204
2UXD|1|A|G|216

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains