HL_2UXD_018

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

2UXD|1|A|U|839, 2UXD|1|A|U|841

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UXD_018 not in the Motif Atlas

Homologous match to HL_4LFB_018

Geometric discrepancy: 0.1656

The information below is about HL_4LFB_018

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

2UXD|1|A|G|838
2UXD|1|A|U|839
2UXD|1|A|C|840
2UXD|1|A|U|841
2UXD|1|A|C|848

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN S2