HL_2UXD_022

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UXD_022 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.18

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

2UXD|1|A|U|1012
2UXD|1|A|G|1013
2UXD|1|A|A|1014
2UXD|1|A|A|1015
2UXD|1|A|A|1016
2UXD|1|A|G|1017

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN S14

Chain S

RIBOSOMAL PROTEIN S19