HL_2UXD_026

3D structure

PDB id

2UXD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

2UXD|1|A|U|1136, 2UXD|1|A|G|1139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2UXD_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2091

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

2UXD|1|A|G|1134
2UXD|1|A|U|1135
2UXD|1|A|U|1136
2UXD|1|A|C|1137
2UXD|1|A|G|1138
2UXD|1|A|G|1139
2UXD|1|A|C|1140

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains