3D structure

PDB id
2UXD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAUCAGCCAUGC
Length
12 nucleotides
Bulged bases
2UXD|1|A|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_2UXD_030 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.1327
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

2UXD|1|A|G|1356
2UXD|1|A|A|1357
2UXD|1|A|U|1358
2UXD|1|A|C|1359
2UXD|1|A|A|1360
2UXD|1|A|G|1361
2UXD|1|A|C|1362
2UXD|1|A|C|1363
2UXD|1|A|A|1363|||A
2UXD|1|A|U|1364
2UXD|1|A|G|1365
2UXD|1|A|C|1366

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain G
RIBOSOMAL PROTEIN S7
Chain I
RIBOSOMAL PROTEIN S9
Chain J
RIBOSOMAL PROTEIN S10
Chain M
RIBOSOMAL PROTEIN S13
Chain N
RIBOSOMAL PROTEIN S14
Chain V
RIBOSOMAL PROTEIN THX

Coloring options:


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