HL_2UXD_030
3D structure
- PDB id
- 2UXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 2UXD|1|A|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2UXD_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1327
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
2UXD|1|A|G|1356
2UXD|1|A|A|1357
2UXD|1|A|U|1358
2UXD|1|A|C|1359
2UXD|1|A|A|1360
2UXD|1|A|G|1361
2UXD|1|A|C|1362
2UXD|1|A|C|1363
2UXD|1|A|A|1363|||A
2UXD|1|A|U|1364
2UXD|1|A|G|1365
2UXD|1|A|C|1366
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain I
- RIBOSOMAL PROTEIN S9
- Chain J
- RIBOSOMAL PROTEIN S10
- Chain M
- RIBOSOMAL PROTEIN S13
- Chain N
- RIBOSOMAL PROTEIN S14
- Chain V
- RIBOSOMAL PROTEIN THX
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