HL_2VQE_005

3D structure

PDB id

2VQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

2VQE|1|A|U|202, 2VQE|1|A|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2VQE_005 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.5599

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

2VQE|1|A|C|201
2VQE|1|A|U|202
2VQE|1|A|U|203
2VQE|1|A|U|204
2VQE|1|A|G|216

Current chains

Chain A

16S RRNA

Nearby chains