HL_2VQE_023

3D structure

PDB id

2VQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2VQE_023 not in the Motif Atlas

Homologous match to HL_4LFB_023

Geometric discrepancy: 0.1704

The information below is about HL_4LFB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39005.1

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

275

Unit IDs

2VQE|1|A|C|1030
2VQE|1|A|G|1030|||A
2VQE|1|A|C|1030|||B
2VQE|1|A|G|1030|||C
2VQE|1|A|A|1030|||D
2VQE|1|A|G|1031

Current chains

Chain A

16S RRNA

Nearby chains