HL_2VQF_008
3D structure
- PDB id
- 2VQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CACUGAGACACGGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2VQF_008 not in the Motif Atlas
- Homologous match to HL_4LFB_008
- Geometric discrepancy: 0.0433
- The information below is about HL_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39665.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
2VQF|1|A|C|320
2VQF|1|A|A|321
2VQF|1|A|C|322
2VQF|1|A|U|323
2VQF|1|A|G|324
2VQF|1|A|A|325
2VQF|1|A|G|326
2VQF|1|A|A|327
2VQF|1|A|C|328
2VQF|1|A|A|329
2VQF|1|A|C|330
2VQF|1|A|G|331
2VQF|1|A|G|332
2VQF|1|A|G|333
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain P
- 30S RIBOSOMAL PROTEIN S16
- Chain T
- 30S RIBOSOMAL PROTEIN S20
Coloring options: