HL_2VQF_011

3D structure

PDB id

2VQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

2VQF|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2VQF_011 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1186

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

2VQF|1|A|C|419
2VQF|1|A|U|420
2VQF|1|A|U|421
2VQF|1|A|C|422
2VQF|1|A|G|423
2VQF|1|A|G|424

Current chains

Chain A

16S RRNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain D

30S RIBOSOMAL PROTEIN S4