HL_2VQF_013

3D structure

PDB id

2VQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2VQF_013 not in the Motif Atlas

Homologous match to HL_4LFB_033

Geometric discrepancy: 0.0587

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

2VQF|1|A|C|522
2VQF|1|A|A|523
2VQF|1|A|G|524
2VQF|1|A|C|525
2VQF|1|A|C|526
2VQF|1|A|G|527

Current chains

Chain A

16S RRNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12

Chain X

5'-R(*UP*UP*GP*AP*AP*AP)-3'