HL_2VQF_029
3D structure
- PDB id
- 2VQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2VQF_029 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.0856
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
2VQF|1|A|C|1314
2VQF|1|A|U|1315
2VQF|1|A|G|1316
2VQF|1|A|C|1317
2VQF|1|A|A|1318
2VQF|1|A|A|1319
2VQF|1|A|C|1320
2VQF|1|A|C|1321
2VQF|1|A|C|1322
2VQF|1|A|G|1323
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain N
- 30S RIBOSOMAL PROTEIN S14 TYPE Z
- Chain S
- 30S RIBOSOMAL PROTEIN S19
Coloring options: