HL_2W2H_001

3D structure

PDB id

2W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis of transcription activation by the Cyclin T1-Tat-TAR RNA complex from EIAV

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UUCUGCGG

Length

8 nucleotides

Bulged bases

2W2H|1|R|U|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41181.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

2W2H|1|R|U|10
2W2H|1|R|U|11
2W2H|1|R|C|12
2W2H|1|R|U|13
2W2H|1|R|G|14
2W2H|1|R|C|15
2W2H|1|R|G|16
2W2H|1|R|G|17

Current chains

Chain R

5'-R(*GP*CP*UP*CP*AP*GP*AP*UP*CP*UP *GP*CP*GP*GP*UP*CP*UP*GP*AP*GP*C)-3'

Nearby chains

Chain A

CYCLIN-T1

Chain C

PROTEIN TAT