HL_2WW9_005

3D structure

PDB id

2WW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the active yeast Ssh1 complex bound to the yeast 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2WW9_005 not in the Motif Atlas

Geometric match to HL_6UFG_004

Geometric discrepancy: 0.1268

The information below is about HL_6UFG_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

2WW9|1|G|A|918
2WW9|1|G|C|919
2WW9|1|G|C|920
2WW9|1|G|U|921
2WW9|1|G|U|922
2WW9|1|G|U|923

Current chains

Chain G

25S RRNA

Nearby chains

Chain A

SEC SIXTY-ONE PROTEIN HOMOLOG

Chain J

60S RIBOSOMAL PROTEIN L19