HL_2WWA_001
3D structure
- PDB id
- 2WWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2WWA_001 not in the Motif Atlas
- Geometric match to HL_2XDB_001
- Geometric discrepancy: 0.3155
- The information below is about HL_2XDB_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_35677.5
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
2WWA|1|D|C|47
2WWA|1|D|A|48
2WWA|1|D|G|49
2WWA|1|D|C|50
2WWA|1|D|G|51
2WWA|1|D|A|52
2WWA|1|D|A|53
2WWA|1|D|A|54
2WWA|1|D|U|55
2WWA|1|D|G|56
Current chains
- Chain D
- 25S RRNA
Nearby chains
- Chain A
- SEC SIXTY-ONE PROTEIN HOMOLOG
- Chain F
- 25S RRNA
- Chain K
- 60S RIBOSOMAL PROTEIN L25
- Chain N
- 60S RIBOSOMAL PROTEIN L35
- Chain O
- 60S RIBOSOMAL PROTEIN L39
Coloring options: