HL_2WWA_004

3D structure

PDB id

2WWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

2WWA|1|F|G|1665, 2WWA|1|F|U|1669

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2WWA_004 not in the Motif Atlas

Geometric match to HL_4WF9_033

Geometric discrepancy: 0.2383

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

2WWA|1|F|A|1664
2WWA|1|F|G|1665
2WWA|1|F|C|1666
2WWA|1|F|A|1667
2WWA|1|F|G|1668
2WWA|1|F|U|1669
2WWA|1|F|U|1670

Current chains

Chain F

25S RRNA

Nearby chains

Chain E

25S RRNA

Chain I

60S RIBOSOMAL PROTEIN L17-A

Chain J

60S RIBOSOMAL PROTEIN L19