HL_2WWA_005

3D structure

PDB id

2WWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of idle yeast Ssh1 complex bound to the yeast 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2WWA_005 not in the Motif Atlas

Geometric match to HL_6SVS_001

Geometric discrepancy: 0.1412

The information below is about HL_6SVS_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

2WWA|1|G|A|1918
2WWA|1|G|C|1919
2WWA|1|G|C|1920
2WWA|1|G|U|1921
2WWA|1|G|U|1922
2WWA|1|G|U|1923

Current chains

Chain G

25S RRNA

Nearby chains

Chain A

SEC SIXTY-ONE PROTEIN HOMOLOG

Chain J

60S RIBOSOMAL PROTEIN L19