HL_2WWB_001
3D structure
- PDB id
- 2WWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.48 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_2WWB_001 not in the Motif Atlas
- Geometric match to HL_2XDB_001
- Geometric discrepancy: 0.2974
- The information below is about HL_2XDB_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_35677.5
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
2WWB|1|D|C|47
2WWB|1|D|A|48
2WWB|1|D|G|49
2WWB|1|D|C|50
2WWB|1|D|G|51
2WWB|1|D|A|52
2WWB|1|D|A|53
2WWB|1|D|A|54
2WWB|1|D|U|55
2WWB|1|D|G|56
Current chains
- Chain D
- 5.8S RRNA
Nearby chains
- Chain A
- PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1
- Chain F
- 25S RRNA
- Chain K
- 60S RIBOSOMAL PROTEIN L25
- Chain N
- 60S RIBOSOMAL PROTEIN L35
- Chain O
- 60S RIBOSOMAL PROTEIN L39
Coloring options: