HL_2WWB_003

3D structure

PDB id

2WWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

6.48 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2WWB_003 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1501

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

2WWB|1|E|U|540
2WWB|1|E|G|541
2WWB|1|E|A|542
2WWB|1|E|A|543
2WWB|1|E|A|544
2WWB|1|E|A|545

Current chains

Chain E

25S RRNA

Nearby chains

Chain F

25S RRNA

Chain I

60S RIBOSOMAL PROTEIN L17-A