HL_2XD0_003

3D structure

PDB id

2XD0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A processed non-coding RNA regulates a bacterial antiviral system

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAUUUGCUA

Length

10 nucleotides

Bulged bases

2XD0|1|H|A|6, 2XD0|1|H|U|7

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2XD0_003 not in the Motif Atlas

Geometric match to HL_2XDB_001

Geometric discrepancy: 0.11

The information below is about HL_2XDB_001

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_35677.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

2XD0|1|H|U|4
2XD0|1|H|G|5
2XD0|1|H|A|6
2XD0|1|H|U|7
2XD0|1|H|U|8
2XD0|1|H|U|9
2XD0|1|H|G|10
2XD0|1|H|C|11
2XD0|1|H|U|12
2XD0|1|H|A|13

Current chains

Chain H

TOXI

Nearby chains

Chain A

TOXN

Chain B

TOXN