HL_2Y8W_001

3D structure

PDB id

2Y8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CRISPR endoribonuclease Cse3 bound to 20 nt RNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.8 Å

Loop

Sequence

CGCGUG

Length

6 nucleotides

Bulged bases

2Y8W|1|B|G|12, 2Y8W|1|B|C|13, 2Y8W|1|B|G|14, 2Y8W|1|B|U|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

2Y8W|1|B|C|11
2Y8W|1|B|G|12
2Y8W|1|B|C|13
2Y8W|1|B|G|14
2Y8W|1|B|U|15
2Y8W|1|B|G|16

Current chains

Chain B

5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*UP*G)-3'

Nearby chains

Chain A

CSE3