HL_2Y9B_004

3D structure

PDB id

2Y9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the spliceosomal U4 snRNP core domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2Y9B_004 not in the Motif Atlas

Geometric match to HL_4OQU_004

Geometric discrepancy: 0.1973

The information below is about HL_4OQU_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

2Y9B|1|X|G|850
2Y9B|1|X|G|851
2Y9B|1|X|U|852
2Y9B|1|X|A|853
2Y9B|1|X|A|854
2Y9B|1|X|C|855

Current chains

Chain X

HOMO SAPIENS U4A SNRNA

Nearby chains

Chain H

SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEINS B AND B'