HL_2Y9H_005

3D structure

PDB id

2Y9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure A of CRISPR endoribonuclease Cse3 bound to 19 nt RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

ACGCGUGU

Length

8 nucleotides

Bulged bases (A, C, G, U)

13C, 14G, 15U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

2Y9H|1|J|A|10
2Y9H|1|J|C|11
2Y9H|1|J|G|12
2Y9H|1|J|C|13
2Y9H|1|J|G|14
2Y9H|1|J|U|15
2Y9H|1|J|G|16
2Y9H|1|J|U|17

Current chains

Chain J

5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*UP)-3'

Nearby chains

Chain I

CSE3

Chain K

CSE3

Chain N

5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*UP)-3'

Chain O

CSE3