3D structure

PDB id
2Y9H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure A of CRISPR endoribonuclease Cse3 bound to 19 nt RNA
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
ACGCGUGU
Length
8 nucleotides
Bulged bases (A, C, G, U)
13C, 14G, 15U
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_47100.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

2Y9H|1|J|A|10
2Y9H|1|J|C|11
2Y9H|1|J|G|12
2Y9H|1|J|C|13
2Y9H|1|J|G|14
2Y9H|1|J|U|15
2Y9H|1|J|G|16
2Y9H|1|J|U|17

Current chains

Chain J
5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*UP)-3'

Nearby chains

Chain I
CSE3
Chain K
CSE3
Chain N
5'-R(*UP*CP*CP*CP*CP*AP*CP*GP*CP*GP*UP*GP*UP*GP *GP*GP*DGP*AP*UP)-3'
Chain O
CSE3

Coloring options:

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