HL_2ZJP_004

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_004 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2942

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

2ZJP|1|X|C|133
2ZJP|1|X|G|134
2ZJP|1|X|U|135
2ZJP|1|X|A|136
2ZJP|1|X|A|137
2ZJP|1|X|G|138

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L23

Chain V

50S RIBOSOMAL PROTEIN L29