HL_2ZJP_008

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_008 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.1411

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

2ZJP|1|X|C|223
2ZJP|1|X|G|224
2ZJP|1|X|G|225
2ZJP|1|X|C|226
2ZJP|1|X|G|227
2ZJP|1|X|A|228
2ZJP|1|X|G|229

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain I

50S RIBOSOMAL PROTEIN L15

Chain U

50S RIBOSOMAL PROTEIN L28