HL_2ZJP_009

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

2ZJP|1|X|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1522

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

2ZJP|1|X|C|316
2ZJP|1|X|U|317
2ZJP|1|X|G|318
2ZJP|1|X|G|319
2ZJP|1|X|A|320
2ZJP|1|X|A|321
2ZJP|1|X|A|322
2ZJP|1|X|G|323

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain P

50S RIBOSOMAL PROTEIN L22

Chain R

50S RIBOSOMAL PROTEIN L24