HL_2ZJP_012

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

2ZJP|1|X|G|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.2097

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

2ZJP|1|X|G|395
2ZJP|1|X|U|396
2ZJP|1|X|U|397
2ZJP|1|X|C|398
2ZJP|1|X|G|399
2ZJP|1|X|U|400
2ZJP|1|X|G|401
2ZJP|1|X|A|402
2ZJP|1|X|A|403
2ZJP|1|X|A|404
2ZJP|1|X|C|405

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain U

50S RIBOSOMAL PROTEIN L28