HL_2ZJP_013

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

2ZJP|1|X|G|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_013 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1723

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

2ZJP|1|X|G|423
2ZJP|1|X|G|424
2ZJP|1|X|A|425
2ZJP|1|X|C|426
2ZJP|1|X|C|427
2ZJP|1|X|A|428
2ZJP|1|X|C|429
2ZJP|1|X|C|430

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains