HL_2ZJP_023

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

2ZJP|1|X|A|794, 2ZJP|1|X|A|797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_023 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1155

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

2ZJP|1|X|U|792
2ZJP|1|X|G|793
2ZJP|1|X|A|794
2ZJP|1|X|A|795
2ZJP|1|X|A|796
2ZJP|1|X|A|797
2ZJP|1|X|G|798

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2