HL_2ZJP_024

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUGAGG

Length

6 nucleotides

Bulged bases

2ZJP|1|X|U|840, 2ZJP|1|X|G|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_024 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.1591

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.2

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

2ZJP|1|X|U|839
2ZJP|1|X|U|840
2ZJP|1|X|G|841
2ZJP|1|X|A|842
2ZJP|1|X|G|843
2ZJP|1|X|G|844

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L15