HL_2ZJP_040

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

2ZJP|1|X|A|1632, 2ZJP|1|X|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_040 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1412

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

2ZJP|1|X|C|1628
2ZJP|1|X|G|1629
2ZJP|1|X|A|1630
2ZJP|1|X|C|1631
2ZJP|1|X|A|1632
2ZJP|1|X|C|1633
2ZJP|1|X|A|1634
2ZJP|1|X|G|1635

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain P

50S RIBOSOMAL PROTEIN L22