HL_2ZJP_043

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

2ZJP|1|X|U|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_043 not in the Motif Atlas

Homologous match to HL_7A0S_043

Geometric discrepancy: 0.3415

The information below is about HL_7A0S_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2ZJP|1|X|C|1731
2ZJP|1|X|U|1732
2ZJP|1|X|U|1733
2ZJP|1|X|C|1734
2ZJP|1|X|G|1735

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains