HL_2ZJP_048

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

2ZJP|1|X|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_048 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1302

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

2ZJP|1|X|G|1932
2ZJP|1|X|G|1933
2ZJP|1|X|U|1934
2ZJP|1|X|A|1935
2ZJP|1|X|A|1936
2ZJP|1|X|G|1937
2ZJP|1|X|U|1938
2ZJP|1|X|U|1939
2ZJP|1|X|C|1940

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L14