HL_2ZJP_049

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

2ZJP|1|X|A|2013, 2ZJP|1|X|A|2014, 2ZJP|1|X|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.2641

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

2ZJP|1|X|G|2010
2ZJP|1|X|U|2011
2ZJP|1|X|A|2012
2ZJP|1|X|A|2013
2ZJP|1|X|A|2014
2ZJP|1|X|G|2015
2ZJP|1|X|A|2016
2ZJP|1|X|U|2017
2ZJP|1|X|G|2018
2ZJP|1|X|C|2019

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain Y

50S RIBOSOMAL PROTEIN L32