HL_2ZJP_051

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

2ZJP|1|X|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_051 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1087

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

2ZJP|1|X|C|2227
2ZJP|1|X|U|2228
2ZJP|1|X|G|2229
2ZJP|1|X|G|2230
2ZJP|1|X|G|2231
2ZJP|1|X|G|2232
2ZJP|1|X|C|2233
2ZJP|1|X|G|2234
2ZJP|1|X|G|2235

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L16

Chain T

50S RIBOSOMAL PROTEIN L27