HL_2ZJP_055

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUGACACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_055 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.1078

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

2ZJP|1|X|C|2334
2ZJP|1|X|U|2335
2ZJP|1|X|G|2336
2ZJP|1|X|A|2337
2ZJP|1|X|C|2338
2ZJP|1|X|A|2339
2ZJP|1|X|C|2340
2ZJP|1|X|G|2341

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain I

50S RIBOSOMAL PROTEIN L15

Chain T

50S RIBOSOMAL PROTEIN L27