HL_2ZJP_062

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_062 not in the Motif Atlas

Homologous match to HL_7A0S_063

Geometric discrepancy: 0.0929

The information below is about HL_7A0S_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

2ZJP|1|X|C|2637
2ZJP|1|X|G|2638
2ZJP|1|X|A|2639
2ZJP|1|X|G|2640
2ZJP|1|X|A|2641
2ZJP|1|X|G|2642

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L6

Chain H

50S RIBOSOMAL PROTEIN L14