HL_2ZJP_066

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

2ZJP|1|X|A|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_066 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.099

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

2ZJP|1|X|G|2794
2ZJP|1|X|A|2795
2ZJP|1|X|A|2796
2ZJP|1|X|G|2797
2ZJP|1|X|A|2798
2ZJP|1|X|C|2799
2ZJP|1|X|C|2800
2ZJP|1|X|A|2801
2ZJP|1|X|C|2802

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain K

50S RIBOSOMAL PROTEIN L17

Chain M

50S RIBOSOMAL PROTEIN L19