HL_2ZJP_067

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

2ZJP|1|X|C|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_067 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.1329

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

2ZJP|1|X|A|2831
2ZJP|1|X|G|2832
2ZJP|1|X|C|2833
2ZJP|1|X|A|2834
2ZJP|1|X|A|2835
2ZJP|1|X|U|2836

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L19