HL_2ZJP_070

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUCGUGAAA

Length

9 nucleotides

Bulged bases

2ZJP|1|X|G|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2ZJP|1|X|U|396
2ZJP|1|X|U|397
2ZJP|1|X|C|398
2ZJP|1|X|G|399
2ZJP|1|X|U|400
2ZJP|1|X|G|401
2ZJP|1|X|A|402
2ZJP|1|X|A|403
2ZJP|1|X|A|404

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain U

50S RIBOSOMAL PROTEIN L28