HL_2ZJP_071

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCGAAUAG

Length

8 nucleotides

Bulged bases

2ZJP|1|X|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_071 not in the Motif Atlas

Homologous match to HL_7A0S_021

Geometric discrepancy: 0.3341

The information below is about HL_7A0S_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81314.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

2ZJP|1|X|C|651
2ZJP|1|X|C|652
2ZJP|1|X|G|653
2ZJP|1|X|A|654
2ZJP|1|X|A|655
2ZJP|1|X|U|656
2ZJP|1|X|A|657
2ZJP|1|X|G|658

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L33

Chain 3

50S RIBOSOMAL PROTEIN L35