HL_2ZJP_072

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCUAUGGCUAUGC

Length

13 nucleotides

Bulged bases

2ZJP|1|X|A|1468, 2ZJP|1|X|U|1469, 2ZJP|1|X|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_072 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3779

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

2ZJP|1|X|G|1465
2ZJP|1|X|C|1466
2ZJP|1|X|U|1467
2ZJP|1|X|A|1468
2ZJP|1|X|U|1469
2ZJP|1|X|G|1470
2ZJP|1|X|G|1471
2ZJP|1|X|C|1472
2ZJP|1|X|U|1473
2ZJP|1|X|A|1474
2ZJP|1|X|U|1475
2ZJP|1|X|G|1476
2ZJP|1|X|C|1477

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain K

50S RIBOSOMAL PROTEIN L17