HL_2ZJP_076

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

ACCCCAUGCCGAACU

Length

15 nucleotides

Bulged bases

2ZJP|1|Z|G|43

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_2ZJP_076 not in the Motif Atlas

Homologous match to HL_5J7L_215

Geometric discrepancy: 0.2242

The information below is about HL_5J7L_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.2

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

2ZJP|1|Z|A|36
2ZJP|1|Z|C|37
2ZJP|1|Z|C|38
2ZJP|1|Z|C|39
2ZJP|1|Z|C|40
2ZJP|1|Z|A|41
2ZJP|1|Z|U|42
2ZJP|1|Z|G|43
2ZJP|1|Z|C|44
2ZJP|1|Z|C|45
2ZJP|1|Z|G|46
2ZJP|1|Z|A|47
2ZJP|1|Z|A|48
2ZJP|1|Z|C|49
2ZJP|1|Z|U|50

Current chains

Chain Z

RIBOSOMAL 5S RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L5

Chain L

50S RIBOSOMAL PROTEIN L18

Chain X

Large subunit ribosomal RNA; LSU rRNA