HL_2ZJR_011

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

2ZJR|1|X|G|340, 2ZJR|1|X|A|341, 2ZJR|1|X|G|342, 2ZJR|1|X|A|343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68081.2

Basepair signature

cWW-R-R-tWH-R-R

Number of instances in this motif group

10

Unit IDs

2ZJR|1|X|G|338
2ZJR|1|X|U|339
2ZJR|1|X|G|340
2ZJR|1|X|A|341
2ZJR|1|X|G|342
2ZJR|1|X|A|343
2ZJR|1|X|G|344
2ZJR|1|X|U|345
2ZJR|1|X|C|346

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24