HL_2ZJR_012

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

2ZJR|1|X|G|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27429.2

Basepair signature

cWW-R-R-R-R-R-R-R

Number of instances in this motif group

3

Unit IDs

2ZJR|1|X|G|395
2ZJR|1|X|U|396
2ZJR|1|X|U|397
2ZJR|1|X|C|398
2ZJR|1|X|G|399
2ZJR|1|X|U|400
2ZJR|1|X|G|401
2ZJR|1|X|A|402
2ZJR|1|X|A|403
2ZJR|1|X|A|404
2ZJR|1|X|C|405

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain U

50S ribosomal protein L28